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Biodiversity Heritage Library - Program news and collection highlights from BHL
BHL News, Blog Reel, Tech Updates

BHL LEADS Project at the 2019 iConference

Gretchen Stahlman (left), LEADS Fellow and doctoral candidate at University of Arizona, and Carolyn Sheffield (right), former BHL Program Manager now based at the Albin O. Kuhn Library of UMBC, presenting their poster at the 2019 iConference.

BHL was pleased to have the results of their participation in the 2018 LIS Education and Data Science for the National Digital Platform (LEADS-4-NDP) shared via a poster at the 2019 iConference held at the University of Maryland, College Park (UMD) from 31 March – 3 April, 2019. The LEADS program, funded by the Institution of Museum and Library Services (IMLS) and led by Drexel’s Metadata Research Center, supported ten Fellows in 2018 to develop data science skills by contributing to fast-paced, 10-week projects at several different host sites throughout the US. This conference provided an opportunity to present BHL’s LEADS project alongside those from two other 2018 LEADS Fellows as well some Fellows who were recently selected for the 2019 program.

Jointly hosted by UMD, Syracuse University, and University of Maryland, Baltimore County (UMBC), the conference theme was Inform, Include, Inspire. Keynotes included ‘Libraries in the Digital Age: Now What?’ presented by Librarian of Congress Carla Hayden and ‘Opening Our Libraries: Millions of Books Online Through Controlled Digital Lending’ delivered by Brewster Kahle, Founder and Digital Librarian of the Internet Archive. The conference itself was well-attended with strong international representation.

The poster session was held on the afternoon of April 2 and included about 90 posters. The BHL poster was authored by Gretchen Stahlman, LEADS Fellow and doctoral candidate at University of Arizona, and Carolyn Sheffield, former BHL Program Manager now based at the Albin O. Kuhn Library of UMBC. The poster, entitled ‘Geoparsing Biodiversity Heritage Library Collections: A Preliminary Exploration’ provided an overview of an investigation into different approaches for identifying and disambiguating geographic names, and then translating toponyms to polygons or point locations on a map.

The poster abstract, along with others from the conference, is available on the University of Illinois IDEALS website.

‘Geoparsing Biodiversity Heritage Library Collections: A Preliminary Exploration’ poster by Gretchen Stahlman and Carolyn Sheffield, presented at the 2019 iConference.

April 18, 2019by Gretchen Renee Stahlman
BHL News, Blog Reel

My experience as a LEADS Fellow with BHL

woman standing in front of a tree
woman standing in front of a tree

Gretchen Renee Stahlman

As I am wrapping up a short 10-week virtual internship with the Biodiversity Heritage Library, I believe that I will look back on this experience as one of those pivotal opportunities that impact the course of life.

The internship was made possible by the LIS Education and Data Science for the National Digital Platform (LEADS-4-NDP) fellowship program through Drexel University and funded by the Institute of Museum and Library Services, in collaboration with BHL. LEADS-4-NDP has a mission to improve library services by providing LIS (Library and Information Science) educators and researchers with data science skills.

BHL offered an ideal data science challenge for a future LIS scholar like me to explore: a huge dataset of documents spanning five centuries, along with an engaged community of users and researchers interested in extracting new knowledge from these fascinating texts!

In particular, the summer internship focused on exploring methods of identifying references to geographic places within the text of BHL collections, along with ways to visualize these references. This project envisions eventual new library services – perhaps a browse-able map interface where BHL users could locate complex information spatially, as well as generating new biodiversity data for conducting research on distribution of species over time.

As a PhD student at the University of Arizona’s School of Information, I am currently working on a dissertation extracting information from astronomy literature. Although I study data curation from a social science perspective and am particularly focused on astronomy, I wanted to enhance my technical skills in order to contribute to the evolution and relevance of LIS, and to accomplish my own research. LEADS-4-NDP and BHL provided a crash-course and hands-on learning opportunity, and by participating in this program I was able to pull my eyes from the cosmos for awhile and focus on the incredible biodiversity here on Earth.

Through this internship, I attended a two-day data science bootcamp, which was a priceless opportunity to quickly learn valuable techniques with a cohort of 9 other LEADS Fellows. I was also introduced to relevant researchers and projects associated with BHL. After a summer of investigation and experimentation, I created a report with recommendations for a full-scale geoparsing effort based on strategies and resources I examined. I also used Python programming tools to map and compare place names extracted from BHL text using several different human and automated methods. I evaluated and annotated a test corpus of BHL documents that could be used to develop customized Named Entity Recognition for a much larger set of documents. And I configured a software environment for future human annotators.

Although this was a virtual internship and I did not visit Smithsonian in person – unfortunately sweltering in Tucson, Arizona instead – my supervisor Carolyn Sheffield was extremely supportive. I looked forward to our weekly Skype conversations, where we shared ideas and brainstormed. Carolyn has been an ideal mentor, making connections with other projects and frequently sending along helpful information. I am grateful to Carolyn and to Martin Kalfatovic, along with the LEADS faculty and other Fellows, as well as everyone who kindly met with me this summer.

Overall, the internship has illuminated that this is an exciting time to be involved in library science, as our knowledge of the universe – and the technology to research it – rapidly expand. It is fascinating to view printed words as a source of new insight, and when you think of it that way – the library itself is actually an observatory for collecting data and deciphering the mysteries of the natural world!

September 18, 2018by Gretchen Renee Stahlman

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About BHL

The Biodiversity Heritage Library (BHL) is the world’s largest open access digital library for biodiversity literature and archives. BHL operates as a worldwide consortium of natural history, botanical, research, and national libraries working together to digitize the natural history literature held in their collections and make it freely available for open access as part of a global “biodiversity community.”

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