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Biodiversity Heritage Library - Program news and collection highlights from BHL
BHL News, Blog Reel, Tech Updates

BHL LEADS Project at the 2019 iConference

Gretchen Stahlman (left), LEADS Fellow and doctoral candidate at University of Arizona, and Carolyn Sheffield (right), former BHL Program Manager now based at the Albin O. Kuhn Library of UMBC, presenting their poster at the 2019 iConference.

BHL was pleased to have the results of their participation in the 2018 LIS Education and Data Science for the National Digital Platform (LEADS-4-NDP) shared via a poster at the 2019 iConference held at the University of Maryland, College Park (UMD) from 31 March – 3 April, 2019. The LEADS program, funded by the Institution of Museum and Library Services (IMLS) and led by Drexel’s Metadata Research Center, supported ten Fellows in 2018 to develop data science skills by contributing to fast-paced, 10-week projects at several different host sites throughout the US. This conference provided an opportunity to present BHL’s LEADS project alongside those from two other 2018 LEADS Fellows as well some Fellows who were recently selected for the 2019 program.

Jointly hosted by UMD, Syracuse University, and University of Maryland, Baltimore County (UMBC), the conference theme was Inform, Include, Inspire. Keynotes included ‘Libraries in the Digital Age: Now What?’ presented by Librarian of Congress Carla Hayden and ‘Opening Our Libraries: Millions of Books Online Through Controlled Digital Lending’ delivered by Brewster Kahle, Founder and Digital Librarian of the Internet Archive. The conference itself was well-attended with strong international representation.

The poster session was held on the afternoon of April 2 and included about 90 posters. The BHL poster was authored by Gretchen Stahlman, LEADS Fellow and doctoral candidate at University of Arizona, and Carolyn Sheffield, former BHL Program Manager now based at the Albin O. Kuhn Library of UMBC. The poster, entitled ‘Geoparsing Biodiversity Heritage Library Collections: A Preliminary Exploration’ provided an overview of an investigation into different approaches for identifying and disambiguating geographic names, and then translating toponyms to polygons or point locations on a map.

The poster abstract, along with others from the conference, is available on the University of Illinois IDEALS website.

‘Geoparsing Biodiversity Heritage Library Collections: A Preliminary Exploration’ poster by Gretchen Stahlman and Carolyn Sheffield, presented at the 2019 iConference.

April 18, 2019by brooksm
BHL News, Blog Reel

BHL at the GBIF 25th Governing Board Annual Meeting

GBIF 25th Annual Meeting logoAs Chair of the BHL Members’ Council, I had the privilege of attending the 25th Meeting of the GBIF Global Governing Board convened in Kilkenny, Ireland, 15-18 October 2018. I represent BHL in its capacity as an Associate Participant in GBIF at the governing board meeting. BHL has been a participant since 2014.

The Global Biodiversity Information Facility (GBIF) operates through a network of global nodes to develop and maintain an open data infrastructure for sharing digital biodiversity data.

Tour of Kilkenny Castle

Tour of Kilkenny Castle as part of the opening reception at the GBIF 25th Governing Board Annual Meeting. Photo credit: Constance Rinaldo.

GBIF Governing Board Chair Tanya Abrahamse (former CEO South African National Biodiversity Institute) and Donald Hobern (GBIF Executive Secretary), along with the host, Liam Lysaght (National Biodiversity Data Centre, Ireland) led the meeting. Abrahamse and Hobern provided an overview of GBIF activities over the past year, including a discussion of the GBIF Strategic Plan Goals and Work Program updates. The various GBIF Committee chairs (Science, Nodes, Budget) all reported the past year’s activities. Around 4 July 2018, GBIF reached the one billion record mark. The GBIF 26 Governing Board meeting will be part of the Biodiversity_next joint conference in Leiden, The Netherlands.

Tanya Abrahmse speaking

Tanya Abrahmse, chair of GBIF governing board, speaking at the GBIF 25th Governing Board Annual Meeting. Photo credit: Constance Rinaldo.

Results of the Governing Board elections with terms ending in 2020:

  • 1st Vice-Chair, Governing Board: Christoph Hauser, Deputy Director General, Museum fur Naturkunde, Berlin
  • 3rd Vice-Chair, Governing Board: Leonard Krishtalka, Director University of Kansas, Biodiversity Institute and Natural History Museum
  • Nodes Committee Chair: André Heughebaert, Belgian Biodiversity Platform
  • Nodes Committee 1st ViceChair : Anders Telenius, Swedish Museum of Natural History
  • Nodes Committee 2nd Vice-chair : Hulda Gideon, Tanzania Commission for Science and Technology
  • Science Committee 1st ViceChair: Gregory Riccardi, iDigBio/Institute of Scientific Data, Florida State University
Donald Hoburn speaking

Donald Hobern, Executive Secretary of GBIF, speaking during the GBIF 25th Annual Governing Board Meeting. Photo credit: Constance Rinaldo.

Public Session of GBIF Governing Board. GBIF applications and relevance: progress and next steps.

GBIF by the numbers. Photo credit: Constance Rinaldo.

All GBIF delegates and others from the greater biodiversity community in Ireland were invited to the public session. Many of the talks focused on data discovery and mobilization, improving functionality and relevance to policy.

Presentations were introduced by Tim Hirsch (GBIF).

  • org at 1 billion records: trends in data publication and research use
    Kyle Copas, Communications Manager, GBIF Secretariat | presentation
  • Encouraging a data citation culture
    Daniel Noesgaard, Science Communications Coordinator, GBIF Secretariat | presentation
  • Shining a light on ‘dark taxa’: naming and discovering DNA-based biodiversity data, Part 1
    Dmitry Schigel, Scientific Officer, GBIF Secretariat | presentation
  • Shining a light on ‘dark taxa’: naming and discovering DNA-based biodiversity data, Part 2
    Urmas Kõljalg, University of Tartu Natural History Museum & Botanic Garden, Estonia
  • Shining a light on ‘dark taxa’: naming and discovering DNA-based biodiversity data, Part 3
    Dmitry Schigel, Scientific Officer, GBIF Secretariat
  • Improved information on invasive and alien species, Part 1
    Shyama Pagad, IUCN Invasive Species Specialist Group (via video), New Zealand
  • Improved information on invasive and alien species, Part 2
    Tim Hirsch, Deputy Director, GBIF Secretariat | presentation
  • Improved ecological data capture and Essential Biodiversity Variables
    introduced by Donald Hobern, Executive Secretary, GBIF Secretariat
  • Improved ecological data capture and Essential Biodiversity Variables Laetitia Navarro, GEO BON: Group on Earth Observations – Biodiversity Observation Network, Germany | presentation
  • Overcoming the taxonomic challenge Olaf Bánki, Species 2000| Catalogue of Life, Netherlands | presentation
  • Biodiversity data for national reporting Liam Lysaght, National Biodiversity Data Centre, Ireland | presentation

View from Constance Rinaldo’s seat at the GBIF 25th Governing Board Annual Meeting. Photo credit: Constance RInaldo.

The winners of the 2018 Young Researchers Award and Ebbe Nielsen Challenge were presented at the end of the public session. The Young Researchers Award honors projects that foster innovative research and discovery in biodiversity informatics and provides financial support for winners.

  • Raquel Gaião Silva, University of Algarve, Portugal: Raquel is a Master’s student in International Science/ Marine Biodiversity Conservation. She has used GBIF mediated data in her work on climate-driven changes in seaweed distribution in Atlantic Iberian marine forests.
  • Kate Ingenloff, University of Kansas Biodiversity Institute is a doctoral student who used GBIF mediated data along with time-specific environmental and behavioral data to develop better niche models for highly mobile species such as pelagic birds.

The Ebbe Nielsen Challenge annual prize honors the memory of Dr Ebbe Schmidt Nielsen, a principal founder of GBIF and leader in biodiversity informatics. The six recipients shared prize money, some provided by the Swedish Research Council.

  • Checklist recipe: a template for reproducible standardization of species checklist data Lien Reyserhove, Damiano Oldoniand Peter Desmet, INBO: Research Institute for Nature and Forest, Belgium First prize
  • Ozymandias: a biodiversity knowledge graph Roderic D. M. Page, University of Glasgow, United Kingdom First prize
  • The bdverse. Tomer Guetaand Yohay Carmel, The Technion – Israel Institute of Technology, Israel, Vijay Barve, Florida Museum of Natural History, United States, Thiloshon Nagarajah, Informatics Institute of Technology, Sri Lanka, Povilas Gibas, Vilnius University, Lithuania, Ashwin Agrawal, Indian Institute of Technology (BHU), India Second prize
  • GBIF Issues Explorer. Luis J. Villanueva, Smithsonian Institution, United States Second prize
  • Smart mosquito trap to DwC pipeline. Connor Howingtonand Samuel Rund, VectorBase, United States Second prize
  • Taxonomy Tree Editor. Ashish Singh Tomar, University of Granada, Spain | BIG4 Second prize

Videos of the public sessions of the meeting are available on the GBIF website.

Other Explorations

people during an opening reception

Attendees at the opening reception of the GBIF 25th Governing Board Annual Meeting. Photo credit: Constance Rinaldo.

I had some productive, informal meetings with BHL partners and potential partners providing opportunities to explore new partnerships or deepen existing ones. During the reception and other networking events, I learned about GBIF’s Biodiversity Open Ambassador program, a chance to promote the principles of open data sharing in presentations, whether or not the work is about GBIF. GBIF will provide slides and information or you can develop your own to add to appropriate presentations. Discussions with Ana Casino of the Consortium of European Taxonomic Facilities (CETAF), Donald Hobern and Dmitry Shigel (GBIF), Dmitris Koureas (TDWG) and Patricia Koleff (BHL México), among others, determined that BHL’s future plans will augment interoperability in the biodiversity community and that BHL is a critical resource for many GBIF participants.

November 27, 2018by michelle.underhill
BHL News, Blog Reel, User Stories

Rod Page Talks Bioinformatics, Linked Data, and Primary Literature at the Smithsonian

Portrait version of the Biodiversity Heritage Library logo.

On 22 September, Dr. Rod Page, Professor at the University of Glasgow and creator of BioStor, gave a presentation at the Smithsonian’s National Museum of Natural History Library about ideas for extracting and linking data across biodiversity repositories and primary literature.

The talk, entitled “The Sam Adams Talk,” covered topics including phylogenetics, geophylogeny visualizations, linking article and specimen data across repositories, annotations, the biodiversity knowledge graph, and data as source code. A lively Q&A; session between Rod and the audience followed the presentation.

You can view a recording of the presentation on YouTube.

Rod’s talk at the Smithsonian followed the Scientific Collections International Food Security Symposium at the National Agricultural Library, 19-21 September. At the invitation of BHL, Rod gave a presentation at the symposium about using publication data to support food security research. You can view Rod’s Food Security Symposium presentation, entitled “Unknown Knowns, Long Tails, and Long Data“, on his Slideshare.

Visit Rod’s blog iPhylo and follow him on Twitter at @rdmpage to see more of his thoughts on bioinformatics, linked data, and primary literature.

September 29, 2016by ulib-libraryjobs

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The Biodiversity Heritage Library (BHL) is the world’s largest open access digital library for biodiversity literature and archives. BHL operates as a worldwide consortium of natural history, botanical, research, and national libraries working together to digitize the natural history literature held in their collections and make it freely available for open access as part of a global “biodiversity community.”

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