Friday, May 24, 2013

Monsters, the Scientific Revolution, and Physica Curiosa

Schott, Gaspar. Physica Curiosa (1662).

From Superstition to Scientific Reasoning


The seventeenth century was a time of great advancement for science, but it also presented a curious juxtaposition between superstition and science. A part of Europe's Early Modern period and the birth of the Baroque cultural movement, the 1600s also encompassed the early years of the Scientific Revolution, when superstition and religion gave way to scientific reasoning. Furthermore, the Enlightenment, which attempted to replace ideas based on faith or tradition with scientific method, began to take hold later in the century.

Monsters! Physica Curiosa.

By the end of the 17th century, electricity, the telescope and microscope, calculus, universal gravitation, Newton's Laws of Motion, air pressure and calculating machines had entered the scene. And yet, as with all great shifts in cultural thinking, the transition from superstition to science was not instantaneous. Many of the era's great thinkers attempted to reconcile previous beliefs with new discoveries. Case in point: Monsters.

Monsters and the 16th and 17th Centuries


Many of the publications of the 17th century, while beginning to embrace scientific method and conclusions based on experiments, still also accepted fantastical explanations for marvelous occurrences. Books depicting monsters were extremely popular, and many recycled the same illustrations repeatedly, introducing them to new generations (case in point: Gessner hydra, 1560Aldrovandi hydra, 1640; Joannes Jonstonus hydra, 1657). Furthermore, global exploration had begun on an unprecedented scale, and those that traveled published accounts of biodiversity from regions they visited. However, they recorded not only the creatures they saw with their own eyes, but also those described by locals - many of which were beings of myth and folklore. While fantastic to us today, for most during this time, there was no division between magic and reality - they simply coincided. Thus, these fabulous beasts could be a reality. Many were based on briefly-glimpsed real creatures given religious or superstitious twists. What's more, many "monsters" heralded during the time were actually humans or animals with deformities.

For example, Ambroise Paré, a surgeon of the 1500s, authored "the" monster book of the Renaissance: Des Monstres et Prodiges (1573). Translating to "Monsters and Marvels," the work depicted malformed humans and animal-human hybrids. Conjoined twins were a popular example of human "monsters." For instance, Paré illustrates a pair of 15th century female pygopagus conjoined twins that were exhibited in Italian cities for curious spectators.

Conjoined Twins. Physica Curiosa.

Gaspar Schott: Jesuit, Mathematician, Natural Historian, Monster Authority


An exceptional example of the "monsters" proliferated during the 17th century can be found in Gaspar Schott's Physica Curiosa. Schott (1608-1666), a German scientist and Jesuit, specialized in the fields of physics, mathematics, and natural philosophy. He wrote extensively on the mechanical developments of his time, and produced the first published account on Otto von Guericke's experiments on vacuums. His most famous works include Magia Universalis, Technica Curiosa, and Physica Curiosa - essentially encyclopedias magical, mechanical, and natural history knowledge. Schott was a great compiler, and relied on an extensive library for his own research. Most of Schott's publications are aggregations of the writings and research existing on various topics.

Physica Curiosa


Centaur and Satyrs, Physica Curiosa.
Physica Curiosa is an encyclopedia of the natural sciences of the age. In keeping with Schott's character, it compiles many of the illustrations and literature previously published. As with many natural history publications of the era, it depicted fantastical creatures alongside real ones. Divided into twelve books, the first six books (digitized by the Smithsonian Libraries) are devoted to "miraculous" subjects, including Demons and Angels, spectres, demonic possessions, human and beastly monsters, and portents. The last six books deal with the "marvels" of nature - real creatures from exotic locales, such as elephants and rhinos.

Physica Curiosa's target audience was other scholars, educators, and the rich nobility of the time, as this was the demographic that could afford the publication. Though books were beginning to be more prolifically published in relation to the previous century, they were still made by hand and very expensive. The illustrations in this work are copper engravings, which were very practical for scientific illustration as they allowed for much more detail than wood blocks. A single printing of 500-1,000 copies concluded the run of this publication.

Monsters


Monk Fish (Upper Left), Bishop Fish (Lower Right), Sea Devils (Upper Left, Lower Right).
Physica Curiosa begins with a discussion of diabolical magic - that of demons. In his publication Magia Universalis, Schott wrote that magic was once an honorific practice, but that legitimate magic was corrupted after the flood. The remaining natural magic was likely the result of a pact with a demon and was prohibited. He also asserts that demons are the cause of many of the world's "monsters."

Physica Curiosa not only depicts deformed humans as monsters, but also Centaurs, Satyrs, Monk and Bishop Fish, and Sea Devils, to name a few. Human deformities as monsters has been discussed at length, but many other creatures presented by Schott exemplify the practice of misrepresenting real creatures, or imposing religious elements on natural entities. For example, the monk and bishop fish, which were popular beings illustrated throughout the 16th-17th centuries, demonstrate how religious tensions resulted in the association of clerical figures with monsters. Nevertheless, many authors still purported these creatures to be real. In the late 1600s, Johann Zahn wrote that the bishop fish he illustrated in Specula Physico-Mathematico-Historica was fished out of the Baltic Sea in 1531.

The Sea Devil was also a popular monster, which Conrad Gessner, in the 16th century, recorded as having been captured in both Norway and Rome. Historians today postulate that this creature was actually based on the monk seal. Seals were extremely disliked by both fisherman and farmers as nuisances. Aristotle recorded accounts of seals raiding orchards, which Gessner and Ulisse Aldrovandi maintained.

Reality...Kind of


While Schott clearly saw a distinction himself between fantastical creatures and those found in the natural world (as evidenced by the division within his book), he still asserts some incredible beliefs associated with real animals. For instance, he claims that "both fish and bird are made from water," barnacle geese are born from rotting wood, and that angels may have carried men and animals to the New World and distant islands. This demonstrates the tie between magic and science that still permeated Baroque Europe.

Impact on Science


Mermaids, Demons and Monsters, oh my!
It may seem, with extensive conversations about diabolical magic, demons, and monk fish, that Physica Curiosa is little more than a perpetuation of the superstition that characterized the Dark Ages. But believe it or not, Physica Curiosa played an important part in the development of scientific reasoning. For instance, while it still purports some "mystical" explanations for certain miraculous events, Schott also condemns a great deal of the accepted superstitions of the time. For instance, he discredits the use of divining rods to locate treasure, rejects the notion that a corpse bleeds in the presence of its murderer, and condemns drinking the blood of one's beloved in order to cure infatuation. Indeed, within Physica Curiosa, Schott writes regarding many accepted beliefs, "I do not approve of all, because I know that some are doubtful, if not false; others superstitious; others perhaps even manifestly false." Schott also acknowledges that many unexplained phenomena may indeed be scientifically true when he "implores the reader not to be so inhuman as to refuse to believe anything unless he sees it with his own eyes, [as] many things which antiquity thought fabulous are now proved true by frequent experiment."

Thus, Physica Curiosa represented a critical step along the journey of accepting science over superstition. Furthermore, this work and the others of its time, by aggregating the fanciful beliefs of the era in a single publication, presented an excellent body of work against which those of the Enlightenment could react. By comprehensively recording what was accepted as truth during the time, the authors made it easier for future scholars to pinpoint and address widespread, unscientific doctrine.

In conclusion, the sixteenth and seventeenth centuries were a fascinating time in history, as we watch science battle superstition, and see scholars like Schott struggle to make sense of their cultures and their reasoning. Monsters were a inherent part in this discovery process. Deciphering truth from myth, and exploring medical and natural explanations for the unexplained, is what science is all about.

Physica Curiosa Illustrations


Get the flash player here: http://www.adobe.com/flashplayer


You can see more books about the Curious and the Bizarre in BHL and our iTunes U collection. See a collection of fascinating "monster" illustrations in Flickr. See illustrations from the first six parts of Physica Curiosa in Flickr and the slideshow above.

Special thanks to Lilla Vekerdy, Head of Special Collections, Smithsonian Libraries, for her consultation on this post. The Smithsonian Libraries' collection contains 16 books by Schott. The version of Physica Curiosa digitized for BHL is from the Smithsonian Libraries' collection.

Grace Costantino
Program Manager | Biodiversity Heritage Library

References 


  • Gillispie, CC. "Schott, Gaspar." Dictionary of Scientific Biography. New York: Charles Scribner's Sons, 1980. 
  • Thorndike, L. A History of Magic and Experimental Science. New York and London: Columbia University Press, 1923. 596-608. 
  • Michon, Scott. "Sea Monsters." Strange Science, 16 May 2013. 17 May 2013. http://www.strangescience.net

Thursday, May 23, 2013

The Latest News from BHL!

Latest BHL Quarterly Report
If you think all we do is digitize books, get ready to be surprised! Besides adding over 700,000 new pages of open access biodiversity literature to our collection in 2013 alone, we've launched a new website, celebrated the birth of another regional node - BHL-Africa, grown our consortium by adding the Library of Congress as our 15th member library, published two new iTunes U collections, received two prestigious awards, and hosted our seventh Annual Institutional Council Meeting, just to name a few things!

Learn all about these developments, and see how our project is performing, in the latest BHL Quarterly Report and Newsletter! Stay up to date in the future by subscribing to our quarterly newsletters.

We know you'll be impressed at the ways we're inspiring discovery through free access to biodiversity knowledge!

Spring 2013 BHL Newsletter

Wednesday, May 22, 2013

Celebrating the International Day for Biological Diversity

Water and Biodiversity



Water covers 71% of the Earth's surface. 96.5% of Earth's water is found in oceans, 1.7% in groundwater, 1.7% in glaciers and ice caps, and 0.001% in vapor and clouds. Only 2.5% of that water is freshwater, with most of that found in ice and groundwater.

Water is essential for all life on Earth. From the smallest microbe to the largest known life form on Earth - the Blue Whale - life cannot exist without water.

Today is the International Day for Biological Diversity, and the theme is Water and Biodiversity. This theme was chosen to coincide with the International Year of Water Cooperation (2013, as designated by the United Nations), which was specifically celebrated on March 22 as World Water Day. The objective of World Water Day and the International Year of Water Cooperation is to raise awareness about challenges facing water management and ties to sustainable development while also exploring ways to cooperate to ensure that everyone has access to the clean water needed to survive.

The International Day for Biological Diversity was established in 1993 by the United Nations "to increase awareness and understanding about biodiversity issues." It occurs every year on May 22 and is organized by the Convention on Biological Diversity.

While all life depends on water, aquatic species live in water for most or all of their lives. The diversity of aquatic animals and plants is staggering, and the adaptations developed to support this wet lifestyle are numerous. For instance, some breathe by absorbing oxygen in the water through their skin or using gills. Others breathe air, but are specially adapted to hold their breath for extended periods of time. For instance, the sperm whale, one of the deepest-diving mammals, can remain submerged for 90 minutes!

Sperm Whale. Compléments de Buffon. T. 1 (1838).

To celebrate the International Day for Biological Diversity and the International Year of Water Cooperation, we've created a collection of aquatic species illustrations from BHL. We hope you take some time to enjoy the images but also consider what you can do to support water security. Not convinced it's an issue? Take a look at the implications of water insecurity from the Convention on Biological Diversity.

Get the flash player here: http://www.adobe.com/flashplayer

Tuesday, May 21, 2013

Improving the Efficiency of Scientific Research

The Biodiversity Heritage Library and the Hymenoptera Anatomy Ontology


Katja C. Seltmann
The realm of ontology concerns the nature of reality, determining what exists, how it fits within a hierarchy, and how various elements are organized according to similarities and differences. Traditionally a philosophical question within metaphysics, today ontology has a firm application within systems biology as well.

Anatomy ontologies describe the structural and developmental relationships between the various parts of an organism. Defining anatomical ontologies reveals a complete list of distinguishing characteristics for that organism or group of organisms. The act of creating an anatomical ontology requires precise definitions of the terminology used to describe a variety of phenotypes.

Authors that have contributed to the past 250 years of taxonomic literature did not use standardized vocabularies. Katja C. Seltmann (Project Manager for the Tri-Trophic Thematic Collection Network at the American Museum of Natural History) desired to find a way to efficiently analyze this multi-century body of literature to create a single anatomical ontology, specifically for the insect order Hymenoptera. Accomplishing this feat required utilizing the Biodiversity Heritage Library (BHL).

Millions of pages of analog biodiversity literature, spanning the 15th-21st centuries, are digitized and made freely available online by the Biodiversity Heritage Library. Among the over 59,000 titles in the collection is the Journal of Hymenoptera Research (JHR), published by the International Society of Hymenoptera since 1992. Seltmann and a team of four other researchers utilized this publication from BHL to help build the Hymenoptera Anatomy Ontology (HAO).

The Order Hymenoptera contains sawflies, wasps, bees and ants. Find this and other 1807 illustrations of the Order in Nouvelle méthode de classer les hyménoptères et les diptères.
The NSF-funded Hymenoptera Anatomy Ontology is based on a language recognition tool (called the “Proofer”), which can be implemented across biodiversity literature in order to discover domain-specific anatomy terms. Employing the tool across the OCR for JHR resulted in the discovery of nearly 1,200 new terms for HAO. Furthermore, the development of the ontology is iterative. As the “Proofer” is applied to new collections of literature, it finds matches to existing terms as well as proposes new terms to add to the ontology. A human is required to review the proposed terms, selecting those to be added to the growing database.

After creation, this ontology can be applied as a filter to the literature in order to reveal trends in term occurrence within species descriptions, ultimately allowing researchers to analyze hundreds of years worth of scientific publications without having to sift page by page through the texts. The tool is thus instrumental in improving the efficiency of scientific research, and the process and impact was detailed in the 2012 PLoS ONE article “Utilizing Descriptive Statements from the Biodiversity Heritage Library to Expand the Hymenoptera Anatomy Ontology” (Seltmann et al.).*

According to Seltmann, the Biodiversity Heritage Library plays a critical role in modern scientific research, including her own work:

“I am very fond of the BHL. It set a precedent for open access to literature that I feel initiated a cascading of change in our expectations. Sharing information, publications and open access is no longer the suspicious topic it used to be only a few years ago. Now, expectation is that publications, data and otherwise will be readily available. BHL, in my opinion, was truly one of the first examples of an open model becoming successful in the biological community, and, because it was useful, it changed attitudes.” 

The process used to create the Hymenoptera Anatomy Ontology can be applied to other disciplines in order to build any phonotype-relevant ontology. However, as the PLOS article articulates,

“Natural language processing methods for biological data discovery is only possible through open access publications, and efforts such as the Biodiversity Heritage Library to make legacy literature freely available. This exercise to observe trends in the terminology illustrates how the accessibility to literature facilitates anatomy ontology construction.” 

This use case thus provides a clear example of how the BHL is inspiring scientific discovery through free access to biodiversity knowledge.

Interested in telling us about how BHL has helped support your research? Send us feedback or write to feedback@biodiversitylibrary.org.

Grace Costantino
Program Manager | Biodiversity Heritage Library

* Seltmann KC, Pénzes Z, Yoder MJ, Bertone MA, Deans AR (2013) Utilizing Descriptive Statements from the Biodiversity Heritage Library to Expand the Hymenoptera Anatomy Ontology. PLoS ONE 8(2): e55674. doi:10.1371/journal.pone.0055674

Friday, May 17, 2013

The Biodiversity Heritage Library Receives the CBHL Long Award of Extraordinary Merit


The Biodiversity Heritage Library is pleased to announce that it is the recipient of the Charles Robert Long Award of Extraordinary Merit from the Council on Botanical and Horticultural Libraries (CBHL).

The highest honor bestowed by CBHL, the Charles Robert Long Award for Extraordinary Merit was founded to honor outstanding contribution and meritorious service to CBHL or to the field of botanical and horticultural libraries or literature. Since 1988, only 14 people have received this award.

Receiving two separate nominations highlighting BHL’s global collaboration among libraries, innovative outreach, and exceptional bibliographic and technology standards, this year marks the first time an organization has won the award.

As the award letter articulates, “BHL envisions collaboration among botanical libraries on a scale not attempted previously. It fosters research across borders and disciplines and has made itself indispensible in many areas of the globe where botanical and biological libraries are unavailable to scholars. In an era that is increasingly focused on biodiversity, it has become an indispensible resource for many scholars, scientists and students.”

The award was announced during the CBHL Annual Business Meeting in East Lansing, MI, on May 9. Representatives from the Smithsonian Libraries, Harvard Herbarium Botany Libraries, and the New York Botanical Garden accepted the award on behalf of BHL. As part of the honor, BHL received a certificate and lifelong institutional membership to CBHL.

“We hope this [award] will encourage awareness of and further cross-collaboration between natural history libraries and CBHL,” said Laurie Hannah, Chair of the CBHL Long Award Committee.

About the Council on Botanical and Horticultural Libraries 

The Council on Botanical and Horticultural Libraries, Inc. (CBHL) is an international organization of individuals, organizations and institutions concerned with the development, maintenance and use of libraries of botanical and horticultural literature. The purpose of CBHL is to initiate and improve communication and coordinate activities and programs of mutual interest and benefit to its membership.

See the CBHL Press Release about the award.

Wednesday, May 15, 2013

Visual Riches of BHL Dazzle those Outside the Biodiversity Domain

Museums and the Web poster. Trish Rose-Sandler.

This spring BHL staff member Trish Rose-Sandler participated in two conferences which were outside of the biodiversity community but whose attendees were very much interested in the natural history illustrations found within the pages of BHL books and journals. These included the Visual Resources Association (VRA) annual conference held in Providence, Rhode Island, April 3-5, and the Museums and the Web (MW) conference held in Portland, Oregon, April 17-20.

Attendees at the VRA conference are image curators, librarians, and archivists who support scholars in arts and humanities departments within universities or museums. Rose-Sandler’s talk at VRA was part of a session on how visual resource collections are reaching out to new audiences through promotion of their content and collaboration with other disciplines. Much in the same way, BHL is reaching out to new audiences through its image content which has a broad appeal among many different fields of research.

MW Demo Table.
The MW conference is attended by folks who work on the technology side of cultural heritage organizations, mostly museums, but also some libraries and historical societies. The story of BHL and its images was told through a one hour demo session that included a poster, one page handouts, and a slideshow of the illustrations. Rose-Sandler and her Art of Life colleague, Kyle Jaebker, explained the challenges BHL faces in identifying the location of millions of images, how we are providing limited access via Flickr, as well as how the Art of Life project is helping scale this effort by automating their identification and crowdsourcing their description. These visually-oriented professionals were enamored of the image content we possess. One visitor at MW, a scientific illustrator from Prague, commented that her students had used images from the BHL Flickr stream for a scientific illustration course she taught. Other visitors were interested in the algorithms we were developing for automatically identifying the location of images within text resources.

Most of the attendees at both conferences were completely unaware of BHL. Those who had heard of BHL were surprised to learn we provided access to natural history illustrations. VRA and MW provide unique opportunities for us to showcase the BHL content to communities who might not have heard of us otherwise. Natural history illustrations provide common ground where the art and scientific communities intersect. If you have any suggestions for other conferences or venues we should be present at, please send us feedback or email us at feedback@biodiversitylibrary.org.

View Handouts from the Museums and the Web Conference:


Trish Rose-Sandler
Data Analyst | Biodiversity Heritage Library
Missouri Botanical Garden

Monday, May 13, 2013

Refining BHL: New Vision, Mission, and Goal Statements

We are pleased to announce that the BHL Steering Committee has approved new vision, mission, and goal statements for the Biodiversity Heritage Library!

Vision: 


Inspiring discovery through free access to biodiversity knowledge.

Mission: 


The Biodiversity Heritage Library works collaboratively to make biodiversity literature openly available to the world as part of a global biodiversity community.

Goals:


Goal 1: Relevant Content 
Build and maintain the BHL as the largest reliable, reputable, and responsive repository of biodiversity literature and archival materials. 

Goal 2: Tools and Services 
Develop services and tools which facilitate discovery and improve research efficiency of BHL content. 

Goal 3: User Engagement 
Increase global awareness about the BHL through outreach, learning and education, and branding through engagement and collaboration with existing and new user communities. 

Goal 4: Membership and Partnerships 
Grow BHL consortia membership and partnerships while fostering cross-institutional collaboration that continues to serve as a model for digital library development. 

Goal 5: Financial Sustainability 
Ensure sustainability and relevance by being flexible, adaptable, and financially sound while the content and services remain openly and freely available.

Work on revising BHL's vision, mission, and goals began at the September 2012 BHL Staff and Technical Meeting. During the meeting, BHL staff dedicated several hours to pinpointing exactly what the BHL project is about and translating that into elements for a BHL vision statement. Staff also dissected BHL's existing goals, paring them down to simple statements outlining the most important objectives of the project.

Following the meeting, two staff subcommittees worked to take the resulting suggestions and mold those into draft vision and goal statements for BHL. The BHL Secretariat, including the BHL Program Director, Program Manager, and Collections Coordinator, then took all of the recommendations provided by staff and produced final draft vision, mission, and goal statements.

These statements were presented at the 2013 BHL Institutional Council Meeting, May 6-7, in Woods Hole, MA, where the BHL Steering Committee applied final revisions to the statements before approving them as BHL's new official vision, mission, and goals!

You can now see BHL's vision and mission on the homepage of our website, and our goals are clearly articulated on the BHL About page. We hope you find them as inspiring as we do!